T-Coffee (EBI)
T-Coffee is a multiple sequence alignment (MSA) program. Web user interface and web services interfaces at EBI provides Simple Object Access Protocol (SOAP), Representational State Transfer (REST), Open API Interface, and Common Workflow Language (CWL) services. T-Coffee package pre-processes the data by making pair-wise alignments between all sequences and this information is incorporated in the progressive alignment procedure. The structural sequence information may be obtained from various different sources. It can align amino acid and nucleotide sequences. The package combines several alignment methods.
Topic
Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs
Detail
Operation: Multiple sequence alignment
Software interface: Web user interface; command-line user interface
Language: C++
License: GNU GLP v3
Cost: Free
Version name: -
Credit: -
Input: GCG, FASTA, EMBL (Nucleotide only), GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot (Protein only)
Output: ClustalW, Pearson/FASTA, GCG MSF, Phylip, HTML
Contact: es-request@ebi.ac.uk
Collection: EBI Tools
Maturity: Mature
Publications
-
Download and documentation
Source: https://github.com/cbcrg/tcoffee
Documentation: https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT/T-coffee+Help+and+Documentation
Home page: http://www.ebi.ac.uk/Tools/msa/tcoffee/
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